Results

Publications in 2025

Dynamic causal modelling in probabilistic programming languages: Nina Baldy , Marmaduke Woodman , Viktor K. Jirsa and Meysam Hashemi; Journal of The Royal Society Interface June 2025; DOI 10.1098/rsif.2024.0880
Region-specific mean field models enhance simulations of local and global brain dynamics: Roberta Maria Lorenzi, Fulvia Palesi, Claudia Casellato, Claudia A. M. Gandini Wheeler-Kingshott & Egidio D’Angelo; NPJ Systems Biology and Applications June 2025; DOI 10.1038/s41540-025-00543-9
Mapping Brain Lesions to Conduction Delays: The Next Step for Personalized Brain Models in Multiple Sclerosis: C. Mazzara, A. Ziaeemehr, E. Troisi Lopez, L. Cipriano, M. Angiolelli, M. Sparaco, M. Quarantelli, C. Granata, G. Sorrentino, M. Hashemi, V. Jirsa, P. Sorrentino; Human Brain Mapping May 2025; DOI 10.1002/hbm.70219
A computational approach to evaluate how molecular mechanisms impact large-scale brain activity: Alain Destexhe; Maria Sacha; Federico Tesler; Rodrigo Cofre; Nature Computational Science May 2025; DOI 10.1038/s43588-025-00796-8
The Virtual Parkinsonian Patient: Marianna Angiolelli; Damien Depannemaecker; Hasnae Agouram; Jean Ŕegis; Romain Carron; Marmaduke Woodman; Letizia Chiodo; Paul Triebkorn; Abolfazl Ziaeemehr; Meysam Hashemi; Alexandre Eusebio; Viktor Jirsa; Pierpaolo Sorrentino; npj Systems Biology and Applications April 2025; DOI 10.1038/s41540-025-00516-y
Biologically realistic mean field model of spiking neural networks with fast and slow inhibitory synapses: Claudio Di Geronimo, Alain Destexhe, Matteo Di Volo; Journal of Computational Neuroscience April 2025; DOI 10.1101/2025.02.28.640853
Virtual epilepsy patient cohort: generation and evaluation: Borana Dollomaja; Huifang E. Wang; Maxime Guye; Julia Makhalova; Fabrice Bartolomei; Viktor K. Jirsa; PLOS Computational Biology April 2025; DOI 10.1371/journal.pcbi.1012911
Mapping global brain reconfigurations following local targeted manipulations: Giovanni Rabuffo; Houefa-Armelle Lokossou; Zengmin Li; Abolfazl Ziaee-Mehr; Meysam Hashemi; Pascale P. Quilichini; Antoine Ghestem; Ouafae Arab; Monique Esclapez; Parul Verma; Ashish Raj; Alessandro Gozzi; Pierpaolo Sorrentino; Kai-Hsiang Chuang; Teodora-Adriana Perles-Barbacaru; Angèle Viola; Viktor K. Jirsa; Christophe Bernard; Proceedings of the National Academy of Sciences April 2025; DOI 10.1073/pnas.2405706122
Principles and Operation of Virtual Brain Twins: Meysam Hashemi; Damien Depannemaecker; Marisa Saggio; Paul Triebkorn; Giovanni Rabuffo; Jan Fousek; IEEE Reviews in Biomedical Engineering April 2025; DOI 10.1109/rbme.2025.3562951
Simulating the impact of white matter connectivity on processing time scales using brain network models: Paul Triebkorn, Viktor Jirsa & Peter Ford Dominey; Communications Biology February 2025; DOI 10.1038/s42003-025-07587-x
Assessing Functional Connectivity Dynamics During Cognitive Tasks Involving the Dorsal Stream: Huifang E Wang, Jorge Gonzalez-Martinez, Viktor Jirsa, Patrick Chauvel, F-Xavier Alario, Catherine Liegeois-Chauvel; Entropy February 2025; DOI 10.3390/e27060566
Modeling impairment of ionic regulation with extended Adaptive Exponential integrate-and-fire models: Damien Depannemaecker; Federico Tesler; Mathieu Desroches; Viktor Jirsa; Alain Destexhe; Journal of Computational Neuroscience January 2025; DOI 10.1007/s10827-025-00893-7
Entropy and Complexity Tools Across Scales in Neuroscience: A Review: Rodrigo Cofré, Alain Destexhe; Entropy January 2025; DOI 10.3390/e27020115

Results

Publications in 2024

Symmetry breaking organizes the brain's resting state manifold: Jan Fousek; Giovanni Rabuffo; Kashyap Gudibanda; Hiba Sheheitli; Viktor Jirsa; Spase Petkoski; Scientific Reports December 2024; DOI 10.1038/s41598-024-83542-w
Would you publish unrealistic models?: Damien Depannemaecker; Biological Cybernetics December 2024; DOI 10.1007/s00422-024-00999-8
Homeodynamic feedback inhibition control in whole-brain simulations: Jan Stasinski; Halgurd Taher; Jil Mona Meier; Michael Schirner; Dionysios Perdikis; Petra Ritter; PLOS Computational Biology December 2024; DOI 10.1371/journal.pcbi.1012595
The impact of Parkinson’s disease on striatal network connectivity and cortico-striatal drive: an in-silico study: Ilaria Carannante; Martina Scolamiero; J. J. Johannes Hjorth; Alexander Kozlov; Bo Bekkouche; Lihao Guo; Arvind Kumar; Wojciech Chachólski; Jeanette Hellgren Kotaleski; Network Neuroscience December 2024; DOI 10.1162/netn_a_00394
A Multi-Scale Study of Thalamic State-Dependent Responsiveness: Jorin Overwiening; Federico Tesler; Domenico Guarino; Alain Destexhe; PLOS Computational Biology December 2024; DOI 10.1101/2023.12.02.567941
Inference on the Macroscopic Dynamics of Spiking Neurons: Nina Baldy, Martin Breyton, Marmaduke M. Woodman, Viktor K. Jirsa, Meysam Hashemi; Neural Computation September 2024; DOI 10.1162/neco_a_01701
The virtual multiple sclerosis patient: Sorrentino, P.; Pathak, A.; Ziaeemehr, A.; Troisi Lopez, E.; Cipriano, L.; Romano, A.; Sparaco, M.; Quarantelli, M.; Banerjee, A.; Sorrentino, G.; Jirsa, V.; Hashemi, M.; iScience August 2024; DOI 10.1016/j.isci.2024.110101
Multiscale modeling of neuronal dynamics in hippocampus CA1: Federico Tesler; Roberta Maria Lorenzi; Adam Ponzi; Claudia Casellato; Claudia Casellato; Fulvia Palesi; Daniela Gandolfi; Claudia A. M. Gandini Wheeler Kingshott; Claudia A. M. Gandini Wheeler Kingshott; Claudia A. M. Gandini Wheeler Kingshott; Jonathan Mapelli; Egidio D'Angelo; Michele Migliore; Alain Destexhe; Frontiers in Computational Neuroscience August 2024; DOI 10.3389/fncom.2024.1432593
Simulation-based inference on virtual brain models of disorders: Meysam Hashemi; Abolfazl Ziaeemehr; Marmaduke M Woodman; Jan Fousek; Spase Petkoski; Viktor K Jirsa; Machine Learning: Science and Technology July 2024; DOI 10.1088/2632-2153/ad6230
White matter changes after Gamma Knife Capsulotomy in patients with intractable obsessive-compulsive disorder: Giorgio Spatola; Paul Triebkorn; Raphaelle Richieri; Christelle Baunez; Jean Farisse; Axelle Cretol; Eric Guedj; Viktor Jirsa; Jean Regis; Heliyon July 2024; DOI 10.1016/j.heliyon.2024.e34699
Sharing brain imaging data in the Open Science era: how and why?: Giehl, Kathrin; Mutsaerts, Henk-Jan; Aarts, Kristien; Barkhof, Frederik; Caspers, Svenja; Chetelat, Gaël; Colin, Marie-Elisabeth; Düzel, Emrah; Frisoni, Giovanni B; Ikram, M Arfan; Jovicich, Jorge; Morbelli, Silvia; Oertel, Wolfgang; Paret, Christian; Perani, Daniela; Ritter, Petra; Segura, Bàrbara; Wisse, Laura E M; De Witte, Elke; Cappa, Stefano F; van Eimeren, Thilo; The Lancet Digital Health July 2024; DOI 10.1016/s2589-7500(24)00069-4
A lesion‐aware automated processing framework for clinical stroke magnetic resonance imaging: Patrik Bey; Kiret Dhindsa; Amrit Kashyap; Michael Schirner; Jan Feldheim; Marlene Bönstrup; Robert Schulz; Bastian Cheng; Götz Thomalla; Christian Gerloff; Petra Ritter; Human Brain Mapping June 2024; DOI 10.1002/hbm.26701
New clues for the role of cerebellum in schizophrenia and the associated cognitive impairment: Pawan Faris; Doris Pischedda; Fulvia Palesi; Egidio D’Angelo; Egidio D’Angelo; Frontiers in Cellular Neuroscience May 2024; DOI 10.3389/fncel.2024.1386583
Human connectome topology directs cortical traveling waves and shapes frequency gradients: Dominik P. Koller; Michael Schirner; Petra Ritter; Nature Communications April 2024; DOI 10.1038/s41467-024-47860-x
Virtual brain twins: from basic neuroscience to clinical use: Huifang E Wang, Paul Triebkorn, Martin Breyton, Borana Dollomaja, Jean-Didier Lemarechal, Spase Petkoski, Pierpaolo Sorrentino, Damien Depannemaecker, Meysam Hashemi, Viktor K Jirsa; National Science Review February 2024; DOI 10.1093/nsr/nwae079
NeuroEditor: a tool to edit and visualize neuronal morphologies: Ivan Velasco; Juan J. Garcia-Cantero; Juan J. Garcia-Cantero; Juan P. Brito; Juan P. Brito; Sofia Bayona; Sofia Bayona; Luis Pastor; Luis Pastor; Susana Mata; Susana Mata; Frontiers in Neuroanatomy February 2024; DOI 10.3389/fnana.2024.1342762